Update chapter3.qmd
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chapter3.qmd
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chapter3.qmd
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@ -62,14 +62,54 @@ When examining @fig-distro_histo, many clinical chemistry values do not show a s
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## Data Tools
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## Data Tools
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All data handling and modeling were performed using R and R Studio. The current report was rendered in the following environment for documentation and reproducibility.
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All data handling and modeling were performed using R and R Studio. The current report was rendered in the following environment.
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```{r}
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```{r}
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if( requireNamespace("devtools", quietly = TRUE) ) {
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#| label: tbl-platform-info
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devtools::session_info()
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#| tbl-cap: Session Info R Environment
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} else {
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#| echo: false
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sessionInfo()
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#| #| message: false
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}
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df_session_platform <- devtools::session_info()$platform %>%
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unlist(.) %>%
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as.data.frame(.) %>%
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tibble::rownames_to_column(.)
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colnames(df_session_platform) <- c("Setting", "Value")
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knitr::kable(
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df_session_platform
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,align = 'l'
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,booktabs = TRUE
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)
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```
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```{r}
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#| label: tbl-package-info
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#| tbl-cap: Package Info R Environment
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#| echo: false
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#| message: false
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df_session_packages <- devtools::session_info(include_base = TRUE)$packages %>%
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as.data.frame(.) %>%
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dplyr::select(loadedversion, date) %>%
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tibble::rownames_to_column()
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colnames(df_session_packages) <- c("Package", "Loaded Version", "Date")
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used_packages <-renv::dependencies() %>% dplyr::select(2)
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df_session_packages <- df_session_packages %>%
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dplyr::filter(Package %in% used_packages$Package)
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knitr::kable(
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df_session_packages
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,align = 'l'
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,booktabs = TRUE
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)
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```
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```
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## Model Selection
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## Model Selection
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