diff --git a/ML/2-modeling.R b/ML/2-modeling.R index f2ed7e1..07c5f25 100644 --- a/ML/2-modeling.R +++ b/ML/2-modeling.R @@ -118,3 +118,29 @@ final_rf_predict <- class_train %>% ) final_conf_rf <- ys$conf_mat(final_rf_predict, ft4_dia, .pred_class) + + +# random forest regression ------------------------------------------------ + +reg_metrics <- ys$metric_set(ys$rmse, ys$rsq, ys$mae) + +rf_base_reg_model <- p$rand_forest() %>% + p$set_engine("ranger") %>% p$set_mode("regression") + +rf_reg_recipe <- r$recipe(FT4 ~ . , data = reg_train) %>% + r$update_role(subject_id, new_role = "id") %>% + r$update_role(charttime, new_role = "time") %>% + r$step_impute_bag(r$all_predictors()) + + +rf_reg_workflow <- wf$workflow() %>% + wf$add_model(rf_base_reg_model) %>% + wf$add_recipe(rf_reg_recipe) + +rf_base_reg_fit <- p$fit(rf_reg_workflow, reg_train) + +rf_reg_predict <- reg_train %>% + dplyr::select(FT4) %>% + dplyr::bind_cols( + predict(rf_base_reg_fit, reg_train) + )